PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca56796.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GATA
Protein Properties Length: 261aa    MW: 28016.3 Da    PI: 7.9176
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca56796.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.62.2e-20141175135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 CsnC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Dca56796.1 141 CSNCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 175
                 ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.1E-19135186IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-14138177No hitNo description
PROSITE profilePS5011413.903138171IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.7E-17139175IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.61E-13140172No hitNo description
PROSITE patternPS003440141166IPR000679Zinc finger, GATA-type
PfamPF003205.2E-18141175IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MVGPCSYCGP YAQYCGHQAA YYWPPGAVQY GGDNNSDFNS SSSYASSSSP PVDCTLSLGT  60
PSTRLSNVDS DTHYADTTTT SSTNTTTTKH RSSVSSFCWD LLHPSSNKHS SSSTPKSSST  120
RNSNGNGNGN GGGDPLFARR CSNCDTTSTP LWRNGPRGPK SLCNACGIRF KKEERRAAAA  180
TTTAVNTNAV SGTGLIDPHQ GYYNGGWAHQ YSQGAPQKIQ CYGAPNEFRF MDDDRGSESG  240
IQFLSWLTHD RPSGLVHDFT R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679730.11e-100PREDICTED: GATA transcription factor 19
SwissprotQ8LC795e-46GAT18_ARATH; GATA transcription factor 18
TrEMBLA0A0J8F1E91e-100A0A0J8F1E9_BETVU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.14e-36GATA family protein